The Danish Chamber of Commerce in Japan consists of a Board of Directors and a Secretariat. The Board of Directors is responsible for setting the organization's strategy and ensuring that it operates in accordance with its mission and values, while the Secretariat is responsible for day-to-day activities such as organizing events, managing memberships, and providing services to members.

The Board of Directors plays a key role in facilitating networking opportunities between Danish and Japanese companies and consists of experienced business professionals with a strong interest in promoting trade and investment between Denmark and Japan.